PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_870_f_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family C3H
Protein Properties Length: 852aa    MW: 94243.3 Da    PI: 6.2737
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_870_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.91.3e-06265285526
                   --SGGGGTS--TTTTT-SS-SS CS
       zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                    C+ff + G+C  G++C+F H+
  Neem_870_f_1 265 VCDFFTK-GWCIKGNSCRFLHV 285
                   7**9999.*************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.568260287IPR000571Zinc finger, CCCH-type
SMARTSM003560.0014260286IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.23E-6260284IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-4265285IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.9E-4265288IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010220Biological Processpositive regulation of vernalization response
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 852 aa     Download sequence    Send to blast
MSTLTTAAAA CADDDDEEII EVEEVDDLSD SPNDVAEDRS GSLDLCFLCG SQHMKLVDNL  60
VLFAIVVQDV SKEMESQGHK SHLESGSSTE DKSKARQPSN ALAVGESRVN FKSLGSSNEP  120
FTSQKELSHE NQEKSKYSKS RKLLSYAEDN GSQESEISKK DIGAFPQVKT HEERNELHTG  180
GKVHLCNTGI VDSETSSPSS VTKKNVTGGT WIRDRLDEGT SEEEIKPMGM HPGDDKQRMA  240
SRFSSPMIRT RSLSPADGNK RPAVVCDFFT KGWCIKGNSC RFLHVKDDTT NSTQLLEEDL  300
AAATVKTEVQ FNEGSRNETE RSKMACFPDP LALSVRNNVS FSSDLSSERE PPLQEVGENK  360
RLPQENHRPS FLQKENTSSD NSPSSQQLAS FRDDMGSILS YKEVGRESLR KNWPADDYGN  420
SASLKHRASS PIFKNNLLPE YRSSSSGSAT LSSNYHSRNP SSYPSSLEEQ PWIRSKCMRN  480
DYSSPFSSHS LNSSVGTADP TASSFSSHHI RAWTGSLLPF YSSSLNTSPL DAQKLLDSER  540
ESRNSKLSLF LRSTSLFPVS ELEKPGVSAD YKAKISSNDW EPSVPFRPSF FITPTSTSSS  600
RSQYDPLHDG LDSPTIGNVS LKVAFSSVGV STLNMSDQQL NGDSMLSKTM AMECNGDKSS  660
VSSHGRFNEN VLDKNCHTPR IDSYSDREEG VGTSIVDAQI STVPKEDDPS VSTCVKDISK  720
SKKINIDCNT RWENDGSRHD KGLKVDRVRQ KNVMDLEHKT DADVRKESKT AKHFRTGLVD  780
FVKELLKPTW CEGRLSKDAH NTIVKKAVDK VLSTLQPHQI PTNMESIKQY LSLSQPKIAK  840
LVEGYVDKYG KS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006467754.10.0PREDICTED: protein FRIGIDA-ESSENTIAL 1 isoform X1
RefseqXP_006467755.10.0PREDICTED: protein FRIGIDA-ESSENTIAL 1 isoform X1
TrEMBLA0A067GDI00.0A0A067GDI0_CITSI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM156171016
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.12e-55C3H family protein